List of Collaborators

Dr. Sreenivasulu Chintala

Indiana University, Indianapolis, USA

Collaborative publication details

  • Gayathri Ashok, Soumya Basu, Priyamvada Priyamvada, Anand Anbarasu, Sreenivasulu Chintala and Sudha Ramaiah. Coinfections in human papillomavirus associated cancers and prophylatic recommendations. Reviews in Medical Virology, 2024 e2524. [LINK]
  • Sreenivasulu Chintala, Maura A. Dankoski, Anand Anbarasu, Sudha Ramaiah, Sravan Kumar Miryala and Rachel A. Katzanellenbogen. NFX1-123: A potential therapeutic target in cervical cancer. Journal of Medical Virology, 2023,  95, Pages e28856.[LINK]
  • Lei Wei, Sreenivasulu Chintala, Eric Ciamporcero, Swathi Ramakrishnan, May Elbanna, Jianmin Wang, Qiang Hu, Sean T. Glenn, Mitsuko Murakami, Lu Liu, Eduardo Cortes Gomez, Yuchen Sun, Jacob Conroy, Kiersten Marie Miles, Kullappan Malathi, Sudha Ramaiah, Anand Anbarasu, Anna Woloszynska- Read, Candace S. Johnson, Jeffrey Conroy, Song Liu, Carl D. Morrison and Roberto Pili,  Genomic profiling is predictive of response to cisplatin treatment but not to PI3K inhibition in bladder cancer patient-derived xenografts, Oncotarget, 2016, 7(47) Pages 76374-76389.[LINK]

Dr. Paul Livingstone

Professor, School of Sports and Health Sciences, Cardiff Metropolitan University, Cardiff, UK

Collaborative publication details

  • RC Theijeswini, Soumya Basu, Rayapadi G Swetha, Jayaraman Tharmalingam, Sudha Ramaiah, R Calaivanane, V. Raja Sreedharan, Paul Livingstone, Anand Anbarasu. Prophylatic and Therapeutic measures for emerging and re-emerging viruses: artificial intelligence and machine learning – the key to a promising future. Health and Technology, 2024 [LINK]
  • Sreeram Chandra Murthy Peela, Soumya Basu, Jyoti Sharma, Abdullah F AlAsmari, Fawaz AlAsmari, Sultan Alalmaee, Sudha Ramaiah, Sujatha Sistla, Paul Livingstone and Anand Anbarasu. Structure Elucidation and Interaction Dynamics of MefA-MsrD Efflux Proteins in Streptococcus pneumoniae: Impact on Macrolide Susceptibility, ACS Omega, 2023. https://doi.org/10.1021/acsomega.3c05210[LINK]
  • Soumya Basu, Gayathri Ashok, Reetika Debroy, Sudha Ramaiah, Paul Livingstone and Anand Anbarasu. Impact of the COVID-19 pandemic on routine vaccine landscape: A global perspective. Human vaccines & Immunotherapeutics, 2023, Pages 2199656. [LINK] 
  • Anand Anbarasu, Sudha Ramaiah, Paul Livingstone, Vaccine repurposing approach for preventing COVID 19: Can MMR vaccines reduce morbidity and mortality? Human Vaccines and Immunotherapeutics, 2020, 16, Pages 2217-2218.[LINK]

Dr. Jayaraman Tharmalingam

Professor, Wisconsin Institute for Discovery, Madison, Wisconsin

Collaborative publication details

  • RC Theijeswini, Soumya Basu, Rayapadi G Swetha, Jayaraman Tharmalingam, Sudha Ramaiah, R Calaivanane, V. Raja Sreedharan, Paul Livingstone, Anand Anbarasu. Prophylatic and Therapeutic measures for emerging and re-emerging viruses: artificial intelligence and machine learning – the key to a promising future. Health and Technology, 2024 [LINK]

Dr. K. Sekar

Professor, Laboratory for Structural Biology and Bio-computing, Department of Computational and Data Sciences, Indian Institute of Science, Bangalore

Collaborative publication details

  • Rayapadi G Swetha, Sudha Ramaiah, Kanagaraj Sekar, Anand Anbarasu, Melioidosis Database (MDB): A comprehensive web based resource on Melioidosis and gene protein repository for Burkholderia pseudomallei, Research Journal of Biotechnology, 2017, 12(1): Pages 48-55.[LINK]
  • Rayapadi G Swetha, Sudha Ramaiah, Anand Anbarasu and Kanagaraj Sekar, Ebolavirus Database: Gene and Protein Information Resource for Ebolaviruses, Advances in Bioinformatics, 2016 Article ID 1673284, 4 pages.[LINK]
  • Rayapadi Swetha, Dinesh Kumar Kala Sekar, Ekambaram Durga Devi, Zaheer Zameer Ahmed, Sudha Ramaiah, Anand Anbarasu and Kanagaraj Sekar, Streptococcus pneumoniae Genome Database (SPGDB): A database for strain specific comparative analysis of Streptococcus pneumoniae genes and proteins, Genomics, 2014, (104) Pages 582-586.[LINK]
  • Rayapadi G Swetha, Dinesh Kumar Kala Sekar, Sudha Ramaiah, Anand Anbarasu and Kanagaraj Sekar, Haemophilus influenzae Genome Database (HIGDB): A single point web resource for Haemophilus influenzae, Computers in Biology & Medicine, 2014, (55) Pages 86-91.[LINK]

Dr. Harpreet Singh

Scientist, Head, Informatics, Systems & Research Management, Indian Council of Medical Research, New Delhi, India

Collaborative publication details

  • Mahalakshmi Thillainayagam, Kullappan Malathi, Anand Anbarasu, Harpeet Singh, Renu Bahadur and Sudha Ramaiah, Insights on inhibition of Plasmodium falciparum plasmepsin I by novel epoxyazadiradione derivatives – Molecular docking and Comparative molecular field analysis, Journal of Biomolecular structure and Dynamics, 2019, 37(12),  Pages 3168-3182.[LINK]
  • P. Lavanya, Sudha Ramaiah, Harpeet Singh, Renu Bahadur and Anand Anbarasu, Investigations on the role of CH…O interactions and its impact on stability and specificity of Penicillin binding proteins, Computers in Biology & Medicine, 2015, (65) Pages 85-92.[LINK]

Dr. Balaji Veeraraghavan

The Hilda Lazarus Core Research Chair & Professor, Department of Clinical Microbiology, Christian Medical College, Vellore

Collaborative publication details

  • Saranya Vijayakumar, Rayapadi G Swetha, Yamuna Devi Batthavatchalam, Karthick Vasudevan, Baby Abirami Shankar, Agilandeeswari Kirubananthan, Kamini Walia, Sudha Ramaiah, Indranil Biswas, Balaji Veeraraghavan and Anand Anbarasu. Genomic investigation unevils colistin resistance mechanism in carbapenem-resistant Acinetobacter baumannii clinical isolates. Microbiology Spectrum, 2024 e02511-23.[LINK]
  • Yamuna Devi Bakthavatchalam, Soumya Basu, Abirami Shankar, Sudha Ramaiah, Anand Anbarasu and Balaji Veeraraghavan. Genomics and structural insight into the masking of gentamicin-resistance in clinical Burkholderia pseudomallei strain VB29710 from India. Diagnostic Microbiology and Infectious Disease, 2022, Pages 115878. [LINK]
  • Rosemol Varghese, Soumya Basu, Ayyanraj Neeravi, Agilakumari Pragasam, V Aravind, Richa Gupta, Angel Miraclin, Sudha Ramaiah, Anand Anbarasu, Balaji Veeraraghavan, Emergence of Meropenem Resistance Among Cefotaxime Non-susceptible Streptococcus pneumoniae: Evidence and Challenges, Frontiers in Microbiology, 2022, 3, Pages 12.[LINK]
  • Soumya Basu, Rosemol Varghese, Reetika Debroy, Sudha Ramaiah, Balaji Veeraraghavan, Anand Anbarasu. Non-steroidal anti-inflammatory drugs ketorolac and etodolac can augment the treatment against pneumococcal meningitis by targeting penicillin-binding proteins. Microbial Pathogenesis, 2022, 105694. [LINK]
  • Soumya Basu, Aniket Naha, Balaji Veeraraghavan, Sudha Ramaiah, Anand Anbarasu, In-silico structure evaluation of BAG3 and elucidating its association with bacterial infections through protein-protein and host-pathogen interaction analysis, Journal of cellular Biochemistry, 2022, 123, Pages 115-127.[LINK]
  • Chaitra Shankar, Soumya Basu, Binesh Lal, Sathiya Shanmugam, Karthick Vasudevan, Purva Mathur, Sudha Ramaiah, Anand Anbarasu, Balaji Veeraraghavan, Aerobactin, seems to be a promising marker compared to unstable RmpA2 for the identification of hypervirulent carbapenem resistant Klebsiella pneumoniae: in-silico and in-vitro evidence, Frontiers in Cellular and Infection Microbiology, 2021, 11,  Pages 709681.[LINK]
  • Aniket Naha, Saranya Vijayakumar, Binesh Lal, Baby Abirami Shankar, Suriya Chandran, Sudha Ramaiah, Balaji Veeraraghavan, Anand Anbarasu, Genome sequencing and molecular characterisation of XDR Acinetobacter baumannii reveal complexities in resistance: Novel combination of Sulbactam-Durlobactam holds promise for therapeutic intervention, Journal of cellular Biochemistry, 2021, 122, Pages 1946-1957.[LINK]
  • Soumya Basu, Balaji Veeraraghavan, Sudha Ramaiah, and Anand Anbarasu. “Novel cyclohexanone compound as a potential ligand against SARS-CoV-2 main-protease.” Microbial pathogenesis 149 (2020): 104546.[LINK]

Dr. Anand Manoharan

Director Research, Kanchi Kamakoti Childs Trust Hospital- CTMRF, Chennai

Collaborative publication details

  • Sara Chandy, Hithesh Kumar, Sara Pearl, Soumya Basu, Gurumoorthy M, Janani Sankar, Anand Manoharan, Sudha Ramaiah, Anand Anbarasu. Whole genome analysis reveals unique traits of SARS-CoV-2 in pediatric patients. Gene. 2024 Apr 24:148508. [LINK]
  • Santhiya Vijayakumar, Hithesh Kumar, Soumya Basu, Sara Chandy, Anand Anbarasu, Anand Manoharan, Sudha Ramaiah. Changing Landscape of Antimicrobial Resistance in Neonatal Sepsis: An in silico Analyses of Multidrug Resistance in Klebsiella pneumoniae. The Pediatric Infectious Disease Journal, 2024.[LINK]
  • Hithesh Kumar, Anand Manoharan, Anand Anbarasu and Sudha Ramaiah. Computational study of the piperidine and FtsZ interaction in Salmonella Typhi: implications for disrupting cell division machinery. Journal Biomolecular Structure Dynamics, 2024 1–14.[LINK]
  • Hithesh Kumar, Anand Manoharan and Sudha Ramaiah. Unravelling the nsSNP mediated mechanism of antibiotic resistance in Salmonella enterica serovar typhi and identification of potential therapeutic alternatives: A genomics and structural bioinformatics study. Clinical Epidemiology and Global Health, 2023 Oct 14:101407.[LINK]
  • Hithesh Kumar, Anand Manoharan, Anand Anbarasu and Sudha Ramaiah. Emergence of sulphonamide resistance in azithromycin-resistant pediatric strains of Salmonella Typhi and Paratyphi A: A genomics insight. Gene, 2022, 851, Pages 146995.[LINK]
  • Anand Manoharan, Dipjyoti Dey, Sulochana Putlibai, Sudha Ramaiah, Anand Anbarasu, Balasubramanian S. Epidemiology of Multidrug Resistance among Salmonella enterica serovars typhi and paratyphi A at a Tertiary Pediatric Hospital in India Over a Decade; In-silico Approach to Elucidate the Molecular Mechanism of Quinolone Resistance. International journal of infectious diseases, 2022, 119, Pages 146-149.[LINK]
  • Nebu George Thomas, Anand Manoharan, Anand Anbarasu, Preclinical Evaluation of Sol-gel Synthesized Modulated 45S5-Bioglass Based Biodegradable Bone Graft Intended for Alveolar Bone Regeneration, Journal of Hard Tissue Biology, 2021, 30, Pages 303-308.[LINK]
  • Madhan Sugumar, K.M.Kumar, Anand Manoharan, Anand Anbarasu and Sudha Ramaiah, Detection of OXA-1 β-Lactamase Gene of Klebsiella pneumoniae from Blood Stream Infections (BSI) by Conventional PCR and In-Silico Analysis to Understand the Mechanism of OXA Mediated Resistance, PLOS ONE, 2014, 9(3), Pages e91800.[LINK]

Dr. Shridhar Narayanan

CEO, Foundation for Neglected Disease Research, Bangalore

Collaborative publication details

  • Parvinder Kaur, Santanu Datta, Radha Krishan Shandil, Naveen Kumar, Nanduri Robert, Upneet K. Sokhi, Supreeth Guptha, Shridhar Narayanan, Anand Anbarasu and Sudha Ramaiah, Unravelling the Secrets of Mycobacterial Cidality through the Lens of Antisense, PLOS ONE, 2016, 11(5): e0154513.[LINK]
  • Parvinder Kaur, Anirban Ghosh, Ramya V.K., Deepa G.B., Vijayshree Achar, Santanu Datta, Shridhar Narayanan, Anand Anbarasu and Sudha Ramaiah,  A high-throughput cidality screen for Mycobacterium tuberculosis, PLOS ONE, 2015, 10(2): e0117577.[LINK]

Dr. Saravanan Natarajan

Head & Scientist D, Department of Biochemistry, ICMR National Institute for Research in Tuberculosis (NIRT), Chennai

Collaborative publication details

  • Sravan Kumar Miryala, Soumya Basu, Aniket Naha, Reetika Debroy, Sudha Ramaiah, Anand Anbarasu, Saravanan Natarajan, Datasets comprising the quality validations of simulated protein-ligand complexes and SYBYL docking scores of bioactive natural compounds as inhibitors of Mycobacterium tuberculosis protein-targets. Data in Brief, 2022, 42, Pages 108146.[LINK]
  • Sravan Kumar Miryala, Soumya Basu, Aniket Naha, Reetika Debroy, Sudha Ramaiah, Anand Anbarasu, Saravanan Natarajan, Identification of bioactive natural compounds as efficient inhibitors against Mycobacterium tuberculosis protein-targets: A molecular docking and molecular dynamics simulation study, Journal of Molecular Liquids, 2021, 341, Pages 117340.[LINK]

Dr. Vasan K Sambandamurthy

Senior Vice President – Global Operations, Bugworks Research Inc, Bangalore

Collaborative publication details

  • Sudha Ravishankar, Anisha Ambady, Swetha G Rayapadi, Anand Anbarasu, Sudha Ramaiah and Vasan K Sambandamurthy, Essentiality assessment of Cysteinyl and Lysyl-tRNA synthetases of Mycobacterium smegmatis PLOS ONE, 2016, 11(1): e0147188.[LINK]
  • Sudha Ravishankar, Anisha Ambady, Haripriya Ramu, Naina Vinay Mudugal, Ragadeepthi Tunduguru, Anand Anbarasu, Umender K Sharma, Vasan K Sambandamurthy and Sudha Ramaiah, An IPTG inducible conditional expression system mycobacteria, PLOS ONE, 2015, 10(8): e0134562.[LINK]

Dr. Manabendra Dutta Choudhury

Professor, Department of Life Science and Bioinformatics, Assam University, Silchar, Assam

Collaborative publication details

  • Somorita Baishya, Sheuli Kangsa Banik, Anupam Das Talukdar, Anand Anbarasu, Amitabha Bhattacharjee, Manabendra Dutta Choudhury, Identification of potential drug targets against carbapenem resistant Enterobacteriaceae (CRE) strains using in silico gene network analysis, Gene Reports, 2019, 14, Pages 129–137.[LINK]
  • Somorita Baishya, Chandrayee Deshamukhya, Jayalaxmi Wangkheimayum, Bhaskar Jyoti Das, Anand Anbarasu, Anupam Das Talukdar, Amitabha Bhattacharjee, Manabendra Dutta Choudhury, Transcriptional expression of secondary resistance genes ccdB and repA2 is enhanced in presence of cephalosporin and carbapenem in Escherichia coli, BMC Microbiology, 2021, 21, Pages 79.[LINK]

Dr. Selvaraj Vijayanand

Assistant Professor, Department of Biotechnology, Thiruvalluvar University, Vellore

Collaborative publication details

  • Kayeen Vadakkan, Janarthanam Hemapriya, Anand Anbarasu, Sudha Ramaiah, Selvaraj Vijayanand, Quorum quenching by 2-Hydroxyanisole extracted from Solanum torvum on Pseudomonas aeruginosa and its inhibitory action upon LasR protein, Gene Reports, 2020, 21, Pages 100802[LINK]

Dr. Abdullah Fayez AlAsmari

Head of Dept. of Pharmacology & Toxicology, College of Pharmacy, King Saud University (KSU), Saudi Arabia.

Collaborative publication details

  • Sreeram Chandra Murthy Peela, Soumya Basu, Jyoti Sharma, Abdullah F AlAsmari, Fawaz AlAsmari, Sultan Alalmaee, Sudha Ramaiah, Sujatha Sistla, Paul Livingstone and Anand Anbarasu. Structure Elucidation and Interaction Dynamics of MefA-MsrD Efflux Proteins in Streptococcus pneumoniae: Impact on Macrolide Susceptibility, ACS Omega, 2023. https://doi.org/10.1021/acsomega.3c05210[LINK]

Dr. Sujatha Sistla

Professor, Department of Microbiology, JIPMER, Puducherry.

Collaborative publication details

  • Sreeram Chandra Murthy Peela, Soumya Basu, Jyoti Sharma, Abdullah F AlAsmari, Fawaz AlAsmari, Sultan Alalmaee, Sudha Ramaiah, Sujatha Sistla, Paul Livingstone and Anand Anbarasu. Structure Elucidation and Interaction Dynamics of MefA-MsrD Efflux Proteins in Streptococcus pneumoniae: Impact on Macrolide Susceptibility, ACS Omega, 2023. https://doi.org/10.1021/acsomega.3c05210[LINK]

Dr. Sara Chandy

Director, The CHILDS Trust Medical Research Foundation (CTMRF), Chennai 600034, Tamil Nadu, India.

Collaborative publication details

  • Sara Chandy, Hithesh Kumar, Sara Pearl, Soumya Basu, Gurumoorthy M, Janani Sankar, Anand Manoharan, Sudha Ramaiah, Anand Anbarasu. Whole genome analysis reveals unique traits of SARS-CoV-2 in pediatric patients. Gene. 2024 Apr 24:148508. [LINK]
  • Santhiya Vijayakumar, Hithesh Kumar, Soumya Basu, Sara Chandy, Anand Anbarasu, Anand Manoharan, Sudha Ramaiah. Changing Landscape of Antimicrobial Resistance in Neonatal Sepsis: An in silico Analyses of Multidrug Resistance in Klebsiella pneumoniae. The Pediatric Infectious Disease Journal, 2024.[LINK]